Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022710.1 Corchorus olitorius cultivar O-4 contig22743, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5173
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:1239 original size:16 final size:15

Alignment explanation


    Indices: 1201--1239  Score: 51
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1191 ACAGAGATTG

                   *    *  
       1201 ACAGAAAGCAATTAA
          1 ACAGAAAACAATGAA

                           
       1216 ACAGAAAACAATGAA
          1 ACAGAAAACAATGAA

                     
       1231 ACTAGAAAA
          1 AC-AGAAAA

       1240 AAAAACAAAG


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   15  0.71
  16    6  0.29

ACGTcount: A:0.64, C:0.13, G:0.13, T:0.10


Consensus pattern (15 bp):   
ACAGAAAACAATGAA
Done.