Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022711.1 Corchorus olitorius cultivar O-4 contig22744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2685
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35


Found at i:2182 original size:30 final size:31

Alignment explanation


    Indices: 2129--2187  Score: 84
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       2119 TGTCCCTCTG

                              *            
       2129 AAAAAAAAAACAAAAGAGTGTTAGTAACCTT
          1 AAAAAAAAAACAAAAGAGAGTTAGTAACCTT

                *           *            
       2160 AAAAGAAAAA-AAAAGGGAGTTAGTAACC
          1 AAAAAAAAAACAAAAGAGAGTTAGTAACC

       2188 CCTAAATCAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  30   16  0.64
  31    9  0.36

ACGTcount: A:0.59, C:0.08, G:0.17, T:0.15


Consensus pattern (31 bp):   
AAAAAAAAAACAAAAGAGAGTTAGTAACCTT
Done.