Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022715.1 Corchorus olitorius cultivar O-4 contig22748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5657
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35


Found at i:1810 original size:17 final size:15

Alignment explanation


    Indices: 1770--1817  Score: 51
    Period size: 17  Copynumber: 2.9  Consensus size: 15

       1760 ATTTCTCTTC

                            
       1770 TCCTCTCCTCTCTGTT
          1 TCCTCT-CTCTCTGTT

                              
       1786 TCCTTCTCTCATCTGCTT
          1 TCC-TCTCTC-TCTG-TT

                   *      
       1804 TCCTCTCCCTCTGT
          1 TCCTCTCTCTCTGT

       1818 CAAACCCACA


Statistics
Matches: 28,  Mismatches: 1, Indels: 7
        0.78            0.03        0.19

Matches are distributed among these distances:
  15    1  0.04
  16   10  0.36
  17   12  0.43
  18    5  0.18

ACGTcount: A:0.02, C:0.44, G:0.06, T:0.48


Consensus pattern (15 bp):   
TCCTCTCTCTCTGTT

Found at i:3622 original size:14 final size:15

Alignment explanation


    Indices: 3603--3631  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       3593 ATAGTTAGTT

                           
       3603 TTTCTTTTTC-TTTA
          1 TTTCTTTTTCGTTTA

                           
       3617 TTTCTTTTTCGTTTA
          1 TTTCTTTTTCGTTTA

       3632 GCATTTAGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14   10  0.71
  15    4  0.29

ACGTcount: A:0.07, C:0.14, G:0.03, T:0.76


Consensus pattern (15 bp):   
TTTCTTTTTCGTTTA
Done.