Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022716.1 Corchorus olitorius cultivar O-4 contig22749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13426
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4908 original size:19 final size:19

Alignment explanation


    Indices: 4884--4920  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       4874 TCATGCCAAA

                                
       4884 AATTTCA-TTCTTTACATAC
          1 AATTTCAGTTC-TTACATAC

                              
       4903 AATTTCAGTTCTTACATA
          1 AATTTCAGTTCTTACATA

       4921 TCCGATGGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19   14  0.82
  20    3  0.18

ACGTcount: A:0.32, C:0.19, G:0.03, T:0.46


Consensus pattern (19 bp):   
AATTTCAGTTCTTACATAC
Done.