Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022718.1 Corchorus olitorius cultivar O-4 contig22751, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4171
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33


Found at i:887 original size:21 final size:21

Alignment explanation


    Indices: 862--902  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        852 AAACGTAACT

                                  
        862 ATAAAAA-ATAATAAAAAATTG
          1 ATAAAAAGA-AATAAAAAATTG

                          *     
        883 ATAAAAAGAAATAATAAATT
          1 ATAAAAAGAAATAAAAAATT

        903 TAAAAGAATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   17  0.94
  22    1  0.06

ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24


Consensus pattern (21 bp):   
ATAAAAAGAAATAAAAAATTG

Found at i:3676 original size:15 final size:16

Alignment explanation


    Indices: 3652--3691  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       3642 AGAGGTTGAA

                 *          
       3652 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
       3667 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
       3683 AGAAAACAA
          1 AGAAAACAA

       3692 AACAAACAAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.