genome.fa.s22722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022722.1 Corchorus olitorius cultivar O-4 contig22755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103326

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1908--2077	85	2.0	85	96	0	313	48	1	9	40	1.46
2093--2131	14	2.9	13	80	3	51	53	2	2	41	1.28
2118--2371	132	2.0	123	90	6	391	50	1	11	37	1.49
5920--6059	49	2.9	47	85	6	167	29	15	5	49	1.68
6590--6695	18	5.9	18	88	0	158	24	39	22	13	1.90
7929--8026	15	6.5	15	76	15	96	37	26	23	12	1.90
7927--8026	30	3.3	30	83	6	132	38	26	23	13	1.91
10663--10788	49	2.6	47	83	10	157	30	15	5	49	1.67
15801--15862	30	2.0	31	90	3	99	43	22	9	24	1.83
29603--29928	109	3.0	109	94	1	584	30	11	14	43	1.81
31595--31694	26	3.8	26	98	0	191	52	1	4	43	1.27
32150--32844	351	2.0	352	85	2	950	34	16	16	31	1.92
34362--34423	31	2.0	31	93	0	106	46	4	17	30	1.69
38198--38241	23	1.9	23	90	0	70	31	6	2	59	1.36
41148--41207	29	2.1	29	100	0	120	41	10	21	26	1.85
42529--42563	17	2.0	18	88	5	54	31	8	5	54	1.54
56390--56415	13	2.0	13	100	0	52	23	7	23	46	1.78
56914--57116	51	3.9	52	91	6	329	38	7	11	42	1.70
56914--57116	106	1.9	106	94	0	361	38	7	11	42	1.70
59857--60050	13	15.4	13	72	9	116	27	15	15	40	1.88
59882--60045	24	6.6	24	85	6	220	26	15	16	41	1.88
59883--60061	50	3.6	50	96	0	315	24	15	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59928--60050	37	3.3	38	73	6	117	23	16	16	43	1.87
60974--60998	9	2.8	9	100	0	50	32	44	24	0	1.54
61960--62137	88	2.0	88	94	0	311	22	29	13	34	1.92
62804--62842	6	6.8	6	85	11	55	17	53	25	2	1.56
62804--62842	11	3.4	12	89	6	55	17	53	25	2	1.56
62804--62842	17	2.3	17	95	0	69	17	53	25	2	1.56
63020--63044	2	12.5	2	100	0	50	52	0	0	48	1.00
63291--63347	19	3.4	19	64	31	56	29	7	5	57	1.47
63286--63351	31	2.1	31	100	0	132	28	6	6	59	1.46
63623--63675	13	4.2	12	75	15	54	41	0	3	54	1.18
63802--63836	17	2.1	17	88	0	52	25	45	22	5	1.74
63804--63860	23	2.5	23	88	0	78	28	45	21	5	1.73
63850--63940	16	5.7	16	80	12	107	40	36	14	8	1.77
77300--77338	20	2.0	20	85	10	53	28	5	2	64	1.28
77498--77674	66	2.7	66	83	7	205	35	10	17	36	1.84
77498--77708	44	4.8	44	76	9	187	35	9	18	36	1.84
77498--77698	22	9.0	22	73	10	160	34	9	17	37	1.84
77711--77863	22	7.0	22	71	14	91	37	9	17	35	1.82
77716--77863	44	3.4	43	79	7	147	36	9	16	37	1.82
77907--78178	22	12.5	22	73	11	143	42	9	15	32	1.79
77924--78153	66	3.5	65	76	10	209	42	9	15	32	1.79
78278--78706	22	19.7	22	65	17	101	38	10	15	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78259--78354	44	2.2	42	83	7	113	41	9	16	32	1.80
78270--78420	66	2.3	66	76	6	162	44	7	17	29	1.78
78577--78665	45	2.0	45	84	8	119	35	11	13	39	1.80
78916--78949	2	17.0	2	100	0	68	50	0	0	50	1.00
83759--83823	32	2.0	32	90	0	103	36	33	9	20	1.84
84155--84340	31	6.1	31	78	1	169	36	25	22	16	1.94
101105--101149	25	1.9	23	86	13	65	51	17	11	20	1.75
101390--101424	5	6.8	5	90	6	52	0	82	2	14	0.77

Tables:   1

The End!