Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022723.1 Corchorus olitorius cultivar O-4 contig22756, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44745

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3001--3452
60
7.4
62
83
6
327
30
19
19
30
1.96
3071--3452
30
12.7
30
90
1
487
29
20
20
29
1.98
3658--3709
24
2.2
23
96
3
95
57
26
7
7
1.54
11325--11353
7
4.3
7
91
8
51
86
13
0
0
0.58
11325--11353
13
2.1
14
93
6
51
86
13
0
0
0.58
12151--12598
22
20.2
22
70
12
121
33
11
19
35
1.88
12147--12251
44
2.4
44
88
0
156
37
13
14
35
1.85
12757--13068
169
1.8
170
81
4
389
32
18
18
30
1.95
14360--14922
22
25.4
22
68
14
210
37
11
15
36
1.83
14798--14944
44
3.3
44
81
5
156
29
12
19
38
1.89
14819--14943
22
5.6
22
81
6
128
28
12
20
39
1.88
16403--16442
19
2.1
19
100
0
80
40
17
0
42
1.49
37936--38009
31
2.4
31
93
0
121
29
31
17
21
1.96
40079--40116
16
2.4
16
82
4
51
7
13
36
42
1.73
43457--43709
134
1.9
132
82
8
316
39
15
19
26
1.90
43688--43750
32
2.0
32
93
0
108
31
15
19
33
1.93
43694--43764
32
2.2
32
87
0
97
32
19
16
30
1.95

Tables:   1

The End!