Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022729.1 Corchorus olitorius cultivar O-4 contig22762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36648

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4785--4824
20
2.0
20
95
0
71
40
22
5
32
1.76
5820--5859
13
3.2
13
85
7
55
17
0
15
67
1.23
6891--7402
251
2.0
254
95
1
913
35
16
20
26
1.94
19573--19619
15
3.1
15
81
6
51
29
2
2
65
1.15
22407--22486
32
2.5
32
93
0
133
20
8
35
36
1.83
24415--24449
2
17.5
2
87
0
52
51
0
2
45
1.16
27325--27428
33
3.2
33
66
28
96
33
19
1
45
1.61
27313--27441
64
2.0
64
100
0
258
34
18
1
44
1.59
27925--28011
45
2.0
43
91
6
140
37
22
5
33
1.78
29264--29609
183
1.9
182
93
0
602
28
9
15
45
1.78
29784--29875
46
2.0
46
93
0
157
39
27
2
31
1.69
30187--30245
24
2.5
24
91
0
91
32
15
38
13
1.86

Tables:   1

The End!