Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022731.1 Corchorus olitorius cultivar O-4 contig22764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6937
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:3434 original size:22 final size:20

Alignment explanation


    Indices: 3385--3434  Score: 55
    Period size: 20  Copynumber: 2.4  Consensus size: 20

       3375 CAAGTCGACT

                   *            
       3385 AAGGAATAGTCGACTAAGAG
          1 AAGGAATTGTCGACTAAGAG

               *                * 
       3405 AAGCAATTGTCGACTTCAAGTG
          1 AAGGAATTGTCGAC-T-AAGAG

                    
       3427 AAGGAATT
          1 AAGGAATT

       3435 AGGCGACAAA


Statistics
Matches: 24,  Mismatches: 4, Indels: 2
        0.80            0.13        0.07

Matches are distributed among these distances:
  20   12  0.50
  21    1  0.04
  22   11  0.46

ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22


Consensus pattern (20 bp):   
AAGGAATTGTCGACTAAGAG
Done.