genome.fa.s22732.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022732.1 Corchorus olitorius cultivar O-4 contig22765, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57364

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5144--6608	47	30.5	46	75	12	644	47	6	19	26	1.73
5088--5406	93	3.5	87	80	9	243	46	5	20	27	1.72
5144--6608	94	15.3	93	78	11	906	47	6	19	26	1.73
5355--5586	60	3.9	60	90	0	365	48	3	21	26	1.67
5525--6057	184	2.9	185	87	5	750	45	6	19	29	1.74
5526--6608	141	7.7	140	81	8	808	47	6	19	25	1.74
5953--6025	36	2.0	36	91	0	119	45	6	17	30	1.75
5906--6078	83	2.0	83	83	7	215	46	6	17	28	1.73
5813--6169	177	2.0	175	80	8	402	47	6	18	27	1.73
6599--6728	22	6.1	22	80	7	151	58	5	20	15	1.57
6599--6724	43	3.0	42	75	11	132	58	5	19	15	1.57
6669--6729	19	3.1	19	80	13	68	59	3	21	16	1.51
6604--6729	41	3.0	41	76	4	137	58	5	20	15	1.56
6702--6795	47	2.0	46	85	6	127	54	5	19	21	1.64
7357--7393	18	2.0	19	94	5	67	10	13	10	64	1.49
16399--16445	20	2.3	20	85	3	58	38	2	4	55	1.31
16461--16498	10	4.0	10	80	13	53	44	0	0	55	0.99
16462--16499	18	2.1	18	95	0	67	47	0	0	52	1.00
16509--16602	9	9.7	10	71	21	67	41	10	0	47	1.38
16509--16602	29	3.2	29	89	8	147	41	10	0	47	1.38
16606--16653	21	2.2	22	92	3	80	27	6	4	62	1.38
16845--16969	50	2.5	50	92	1	198	36	11	27	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20208--20242	6	5.8	6	89	0	52	82	2	11	2	0.88
34749--34775	2	13.5	2	100	0	54	48	0	0	51	1.00
35931--36012	32	2.6	32	86	3	105	23	23	8	45	1.80
36485--36510	10	2.6	10	100	0	52	30	38	30	0	1.58
40377--40498	28	4.4	28	91	2	183	38	27	18	15	1.91
40377--40498	55	2.2	56	89	1	183	38	27	18	15	1.91
49206--49478	51	5.4	51	94	0	451	26	27	10	36	1.88
49706--50012	65	4.6	64	78	10	294	29	20	13	36	1.91
49821--50012	64	3.0	64	87	5	246	29	18	14	37	1.91
51840--51864	12	2.1	12	100	0	50	24	0	16	60	1.36
52151--52211	15	4.3	13	86	12	68	37	14	6	40	1.72
52151--52211	14	4.3	14	83	8	70	37	14	6	40	1.72
53341--53428	42	2.1	42	82	4	106	42	11	22	23	1.86

Tables:   1

The End!