genome.fa.s22733.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022733.1 Corchorus olitorius cultivar O-4 contig22766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47203

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6815--6850	19	1.9	18	88	5	54	38	8	22	30	1.83
8648--8694	25	1.9	25	91	4	78	44	4	17	34	1.68
11599--11665	33	2.0	33	88	0	98	16	46	20	16	1.84
13824--13871	11	4.6	11	73	23	50	41	4	18	35	1.70
13812--13871	22	2.9	21	78	19	63	40	3	18	38	1.67
14707--14970	41	6.2	41	70	13	160	26	18	18	35	1.94
14564--15056	173	2.9	173	90	1	747	30	17	16	35	1.92
19688--19727	12	3.3	12	92	0	62	20	22	32	25	1.98
22680--22704	7	3.6	7	100	0	50	72	0	28	0	0.86
25216--25259	14	3.3	14	78	21	58	84	0	15	0	0.63
25216--25283	12	5.2	12	76	13	64	82	0	14	2	0.79
25217--25289	26	2.8	27	84	10	82	80	0	15	4	0.85
25217--25283	32	2.1	32	83	10	84	82	0	14	2	0.79
25348--25404	14	4.3	14	79	14	59	33	7	17	42	1.76
25954--26055	25	4.1	25	69	20	88	37	11	25	25	1.90
25979--26099	50	2.4	50	86	4	165	37	12	26	23	1.91
25979--26114	49	2.8	49	84	6	168	37	11	27	24	1.89
25979--26151	49	3.5	50	77	8	131	39	12	23	23	1.89
30593--30644	20	2.6	20	90	0	77	63	17	5	13	1.48
38387--38425	19	2.1	18	85	4	51	33	15	12	38	1.85
40528--40558	2	15.5	2	100	0	62	51	0	0	48	1.00
42445--42744	149	2.0	150	96	0	557	30	16	10	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44051--44077	4	6.8	4	100	0	54	25	0	22	51	1.48
43983--44281	137	2.2	131	86	10	454	37	6	14	41	1.73
43986--44274	68	4.1	69	93	4	465	36	6	14	41	1.73
44014--44315	137	2.2	140	88	8	438	39	7	13	39	1.73
44288--44312	10	2.5	10	100	0	50	60	8	0	32	1.26

Tables:   1

The End!