Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022737.1 Corchorus olitorius cultivar O-4 contig22770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7553
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29


Found at i:4967 original size:22 final size:23

Alignment explanation


    Indices: 4941--4998  Score: 75
    Period size: 21  Copynumber: 2.6  Consensus size: 23

       4931 GTCGATTTCA

                                   
       4941 AGAAGAAAATTTGTCGACTAAAG
          1 AGAAGAAAATTTGTCGACTAAAG

                 *     *           
       4964 -GAAGCAAA-TAGTCGACTAAAG
          1 AGAAGAAAATTTGTCGACTAAAG

                          
       4985 AGAAGAACAATTTG
          1 AGAAGAA-AATTTG

       4999 ACTAAGGAAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 5
        0.76            0.11        0.14

Matches are distributed among these distances:
  21   12  0.43
  22   12  0.43
  23    2  0.07
  24    2  0.07

ACGTcount: A:0.48, C:0.10, G:0.22, T:0.19


Consensus pattern (23 bp):   
AGAAGAAAATTTGTCGACTAAAG
Done.