Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022744.1 Corchorus olitorius cultivar O-4 contig22777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39627

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8646--8673
14
2.0
14
100
0
56
28
21
21
28
1.99
9891--9937
22
2.2
22
88
3
69
25
2
8
63
1.34
15663--15710
23
2.1
22
88
3
69
41
8
16
33
1.78
15605--15755
61
2.5
61
91
1
239
37
11
15
35
1.84
19287--19353
8
8.4
8
74
12
66
46
1
22
29
1.61
19292--19353
24
2.6
24
86
0
79
46
1
20
30
1.60
19317--19702
58
6.7
58
89
3
493
43
10
21
24
1.84
19680--20567
8
118.1
8
67
20
285
45
4
19
30
1.70
19670--20567
44
20.8
44
74
15
480
45
4
19
30
1.70
19849--19963
22
5.2
22
72
12
92
44
4
20
30
1.71
19951--20217
22
12.2
21
80
10
295
47
3
17
31
1.64
19680--20334
14
46.0
14
68
21
279
45
4
19
30
1.69
19670--19861
22
8.7
22
85
4
244
45
4
19
29
1.71
20408--20564
57
2.8
57
74
13
110
45
3
22
28
1.68
28509--28544
19
1.9
18
88
5
54
36
22
0
41
1.54
28504--28556
11
5.2
10
78
17
56
37
18
1
41
1.62
32284--32387
22
4.7
22
82
9
113
50
15
10
23
1.74
32284--32446
22
7.2
22
74
13
107
50
14
12
23
1.76
34527--34624
34
2.9
34
95
1
180
60
16
9
14
1.59
36322--36424
51
2.0
51
88
3
154
24
17
16
41
1.89
37704--37765
31
2.0
30
87
3
88
48
9
3
38
1.52
38275--38319
20
2.2
20
84
4
54
66
8
8
15
1.43

Tables:   1

The End!