Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022745.1 Corchorus olitorius cultivar O-4 contig22778, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9793

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
201--274
28
2.6
29
84
4
96
36
29
16
17
1.92
4278--4351
28
2.6
29
86
4
105
18
14
28
37
1.91
4705--4755
22
2.3
22
89
0
75
13
19
17
49
1.80
6535--6606
16
4.6
16
79
8
85
5
12
43
38
1.66
6535--6606
32
2.3
31
90
7
110
5
12
43
38
1.66
6596--6655
6
10.3
6
77
13
63
1
20
48
30
1.59
6596--6653
23
2.5
23
91
0
89
1
20
50
27
1.58
6599--6655
17
3.3
18
85
11
66
1
19
50
28
1.57
6768--6801
8
4.4
8
96
3
61
61
0
0
38
0.96
6767--6804
13
3.0
13
88
11
53
60
0
0
39
0.97
7076--7147
31
2.3
31
75
17
78
61
8
4
26
1.43
7375--7406
14
2.2
15
94
5
57
46
0
3
50
1.17
7584--7634
17
3.0
17
94
0
93
1
23
52
21
1.57
7584--7677
23
4.0
23
76
13
77
4
23
47
24
1.69
7595--7650
22
2.5
23
82
5
71
1
26
50
21
1.59
7584--7636
6
9.2
6
85
8
65
1
24
50
22
1.59
7587--7676
16
5.5
16
78
1
72
3
23
48
24
1.66
8062--8168
41
2.6
42
89
1
153
28
13
9
49
1.72

Tables:   1

The End!