Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022747.1 Corchorus olitorius cultivar O-4 contig22780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87288

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--41
17
1.9
17
93
0
57
39
15
6
39
1.72
31--73
20
2.3
19
84
8
52
41
9
4
44
1.57
47--82
18
2.0
18
88
0
54
38
11
11
38
1.76
10556--10591
19
1.9
18
94
5
63
44
5
22
27
1.75
18883--18939
30
1.9
29
89
10
89
21
12
5
61
1.50
19931--19970
16
2.3
18
87
8
57
50
2
30
17
1.59
21747--21789
22
2.0
22
81
9
52
16
9
11
62
1.53
28794--28991
39
5.1
39
74
9
145
27
17
18
36
1.93
28919--29017
38
2.6
38
80
6
110
25
18
18
38
1.93
29968--29992
2
12.5
2
100
0
50
52
0
0
48
1.00
41594--41639
19
2.3
20
85
14
69
28
4
17
50
1.65
42193--42463
141
1.9
142
86
0
391
33
15
14
36
1.88
50405--50476
27
2.7
27
93
0
126
43
25
15
16
1.87
51431--51501
36
2.0
36
91
0
115
42
7
16
33
1.76
52413--52448
18
2.0
18
88
0
54
38
0
16
44
1.48
52432--52506
35
2.1
35
87
4
107
36
4
17
42
1.68
54480--54733
132
1.9
133
89
3
397
36
11
1
50
1.48
54760--54793
17
2.0
17
100
0
68
58
5
5
29
1.45
54950--54987
18
2.1
18
95
0
67
26
5
26
42
1.76
60374--60406
2
17.5
2
87
12
52
48
0
0
51
1.00
68313--68339
2
13.5
2
100
0
54
51
0
0
48
1.00
70564--70598
17
2.1
17
88
0
52
37
31
17
14
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84391--84433
17
2.5
17
80
0
50
48
2
2
46
1.27
85850--85885
19
1.9
18
88
5
54
41
8
22
27
1.82

Tables:   1

The End!