Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022749.1 Corchorus olitorius cultivar O-4 contig22782, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4667
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:3548 original size:58 final size:58

Alignment explanation


    Indices: 3458--3569  Score: 224
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       3448 CTTTATTCTT

                                                                      
       3458 GAGTAATTATCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAGGGATAAAAGG
          1 GAGTAATTATCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAGGGATAAAAGG

                                                                  
       3516 GAGTAATTATCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAGGGATAA
          1 GAGTAATTATCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAGGGATAA

       3570 TTCACACTGG


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  58   54  1.00

ACGTcount: A:0.43, C:0.07, G:0.25, T:0.25


Consensus pattern (58 bp):   
GAGTAATTATCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAGGGATAAAAGG
Done.