Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002275.1 Corchorus olitorius cultivar O-4 contig02275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2668
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38


Found at i:123 original size:17 final size:17

Alignment explanation


    Indices: 91--124  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

         81 TTTTTAATTA

                     * *     
         91 AATTTATTTTTTTTATC
          1 AATTTATTTATGTTATC

                             
        108 AATTTATTTATGTTATC
          1 AATTTATTTATGTTATC

        125 TTATTTATCG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.26, C:0.06, G:0.03, T:0.65


Consensus pattern (17 bp):   
AATTTATTTATGTTATC
Done.