Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022758.1 Corchorus olitorius cultivar O-4 contig22791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26205

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106--259
68
2.3
67
82
6
186
48
14
22
14
1.81
191--789
48
12.5
48
87
4
809
43
19
22
14
1.87
1369--1866
50
9.7
50
83
7
534
37
15
5
42
1.69
1663--1884
30
8.1
30
76
18
250
38
15
4
41
1.66
1690--1734
20
2.3
20
88
3
65
42
11
4
42
1.60
1663--1884
110
2.0
110
96
0
408
38
15
4
41
1.66
1610--1904
80
3.7
80
78
10
359
36
14
6
42
1.71
5927--5965
19
2.1
18
90
4
60
76
0
15
7
0.99
9918--9956
9
4.3
9
84
9
53
76
0
10
12
1.01
9918--9956
19
2.1
19
90
4
62
76
0
10
12
1.01
10334--10363
14
2.1
14
93
0
51
80
10
0
10
0.92
10339--10409
18
3.9
18
76
12
74
78
7
0
14
0.94
10352--10390
9
4.1
9
90
9
60
84
2
0
12
0.72
12038--12073
19
1.9
18
88
5
54
27
22
8
41
1.82
13480--13536
30
1.9
29
86
10
80
57
7
14
21
1.60
22015--22050
19
1.9
18
88
5
54
27
22
8
41
1.82
23916--24419
168
3.0
168
88
2
762
29
20
15
34
1.93
24495--24828
30
11.0
30
86
2
359
19
15
18
46
1.84
24669--24861
30
6.4
30
82
4
133
21
15
18
44
1.86
25961--26002
19
2.2
19
100
0
84
50
26
4
19
1.67

Tables:   1

The End!