Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022759.1 Corchorus olitorius cultivar O-4 contig22792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28489

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3637--3687
20
2.5
20
81
6
59
47
25
9
17
1.78
4610--4650
10
4.2
10
76
17
50
29
19
36
14
1.92
12144--12368
32
7.2
31
88
4
269
49
6
14
29
1.68
12208--12260
17
3.4
17
65
20
51
49
1
15
33
1.55
12154--12368
92
2.3
94
85
8
294
49
6
14
29
1.68
12345--12387
22
2.0
22
90
0
68
60
4
16
18
1.52
12144--12384
124
1.9
122
85
8
326
51
5
14
28
1.65
12341--12520
80
2.4
73
77
12
189
47
8
15
28
1.74
12364--12516
80
1.9
80
86
0
216
47
8
15
28
1.75
12366--12572
80
2.6
78
81
6
206
45
8
14
31
1.75
13734--13792
3
19.7
3
96
0
109
66
1
0
32
1.02
14349--14496
3
49.0
3
91
2
235
34
1
0
63
1.08
20013--20065
20
2.6
21
85
8
74
15
7
18
58
1.60
28314--28357
16
2.6
18
85
10
65
45
0
0
54
0.99
28328--28359
15
2.2
15
94
5
57
50
0
0
50
1.00

Tables:   1

The End!