Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002276.1 Corchorus olitorius cultivar O-4 contig02276, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:619 original size:10 final size:11

Alignment explanation


    Indices: 593--618  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        583 AGTTTAATCG

                       
        593 AAAAATATAAA
          1 AAAAATATAAA

                       
        604 AAAAATATAAA
          1 AAAAATATAAA

                
        615 AAAA
          1 AAAA

        619 TTTTCGACCA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (11 bp):   
AAAAATATAAA
Done.