Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022760.1 Corchorus olitorius cultivar O-4 contig22793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108851

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
599--642
12
3.7
11
84
9
52
84
2
13
0
0.73
611--642
15
2.1
15
94
0
55
84
0
15
0
0.63
771--807
16
2.4
16
86
8
51
37
0
0
62
0.96
1560--1587
10
2.8
10
100
0
56
92
0
0
7
0.37
2042--2135
45
2.2
43
90
7
147
38
22
6
32
1.79
3947--3972
4
6.5
4
100
0
52
76
0
0
23
0.78
4126--4176
17
3.1
16
86
8
66
21
21
21
35
1.96
6375--6422
24
2.0
24
91
0
78
29
16
4
50
1.64
14252--14298
17
2.8
17
83
6
51
53
4
0
42
1.20
16591--16619
12
2.3
13
94
5
51
79
0
20
0
0.74
21156--21530
128
2.9
129
90
1
628
37
17
30
14
1.90
21866--21961
48
2.0
48
91
0
156
28
14
20
36
1.92
28738--28775
6
6.3
6
82
11
51
52
31
15
0
1.43
29576--29609
12
2.8
12
100
0
68
26
14
17
41
1.88
30399--30436
19
2.0
20
89
5
60
31
0
18
50
1.47
38587--38643
30
1.9
30
96
0
105
15
8
15
59
1.59
41475--41501
2
13.5
2
100
0
54
0
48
0
51
1.00
50765--50808
19
2.4
19
82
14
56
29
9
0
61
1.27
51452--51483
16
2.0
16
93
0
55
0
9
0
90
0.45
64167--64492
162
2.0
162
99
0
643
34
24
12
28
1.92
78863--78939
22
3.6
21
77
11
84
42
10
7
38
1.68
78859--78961
43
2.4
44
86
1
136
42
11
8
36
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78967--79029
20
3.0
21
83
9
74
30
12
7
49
1.69
80980--81010
3
10.3
3
100
0
62
67
0
0
32
0.91
88340--88380
5
8.2
5
83
0
55
4
19
0
75
0.98

Tables:   1

The End!