Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022768.1 Corchorus olitorius cultivar O-4 contig22801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76727

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8898--9281
178
2.2
176
80
5
432
38
15
14
31
1.88
21366--21408
22
2.0
22
90
0
68
20
23
32
23
1.98
21438--21479
21
2.0
21
100
0
84
19
19
38
23
1.93
21366--21550
71
2.6
71
93
0
316
19
22
28
30
1.98
21512--21551
21
1.9
21
94
0
71
15
22
37
25
1.93
23102--23139
18
2.1
19
90
5
60
63
7
18
10
1.50
24955--25259
60
5.1
59
82
5
244
47
4
20
28
1.68
24986--25381
60
6.7
60
84
6
366
46
5
19
28
1.72
24986--25402
118
3.5
120
77
9
362
46
5
19
28
1.71
24986--25542
60
9.4
58
80
7
308
45
6
20
28
1.74
25241--25462
59
3.7
59
85
7
211
46
7
19
25
1.76
25336--25559
119
1.9
120
81
2
272
44
8
20
26
1.81
31254--31909
328
2.0
328
91
2
1068
28
21
20
30
1.98
35810--36067
131
2.0
132
98
0
500
30
14
19
36
1.91
36097--36209
56
2.0
56
98
0
217
21
20
19
38
1.93
36187--36300
56
2.0
56
98
0
219
22
17
28
30
1.97
38226--38265
12
3.2
12
86
13
55
17
0
0
82
0.67
38228--38272
14
2.9
16
80
12
58
17
0
0
82
0.68
38227--38273
17
2.8
16
87
12
67
17
0
0
82
0.66
38642--38752
38
3.0
38
69
15
124
22
14
20
42
1.88
38624--38729
34
3.0
34
69
15
106
21
15
19
43
1.88
42710--42890
47
3.9
47
97
0
335
30
28
14
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44362--44399
11
3.5
11
85
10
51
57
2
0
39
1.12
46956--46980
13
1.9
13
100
0
50
64
0
0
36
0.94
52047--52091
6
7.5
6
100
0
90
0
0
64
35
0.94
53688--53732
21
2.1
21
87
0
63
35
11
22
31
1.89
55551--55683
60
2.2
60
77
2
142
36
17
10
36
1.84
56590--56647
28
2.0
28
90
3
89
22
20
22
34
1.97
59663--59728
33
2.0
34
87
3
98
16
25
4
53
1.62
66036--66114
39
2.0
39
100
0
158
36
17
10
35
1.84
66580--66641
27
2.2
28
85
5
81
30
9
20
38
1.85
71628--71698
27
2.6
27
82
8
72
40
1
4
53
1.29
73860--73922
21
3.0
21
75
9
65
23
19
12
44
1.85

Tables:   1

The End!