Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002277.1 Corchorus olitorius cultivar O-4 contig02277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34


Found at i:1005 original size:13 final size:13

Alignment explanation


    Indices: 987--1011  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        977 CTAGAAATTA

                         
        987 TATCTTATCTTAC
          1 TATCTTATCTTAC

                        
       1000 TATCTTATCTTA
          1 TATCTTATCTTA

       1012 TTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56


Consensus pattern (13 bp):   
TATCTTATCTTAC
Done.