Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022773.1 Corchorus olitorius cultivar O-4 contig22806, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6106
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:631 original size:21 final size:21

Alignment explanation


    Indices: 607--661  Score: 83
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        597 GGCTTGGAAT

                *                
        607 GGTGATGGCACGGGCATAACC
          1 GGTGGTGGCACGGGCATAACC

                           *     
        628 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

                   *     
        649 GGTGGTGTCACGG
          1 GGTGGTGGCACGG

        662 TGAATGGCCG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.16, C:0.22, G:0.44, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC

Done.