Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022775.1 Corchorus olitorius cultivar O-4 contig22808, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11624
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:2102 original size:7 final size:7

Alignment explanation


    Indices: 2090--2125  Score: 54
    Period size: 7  Copynumber: 5.0  Consensus size: 7

       2080 TTCTCAATAA

                   
       2090 TGTTTTT
          1 TGTTTTT

                   
       2097 TGTTTTT
          1 TGTTTTT

                   
       2104 TGTTTTT
          1 TGTTTTT

             *      
       2111 TTTTGTTT
          1 TGTT-TTT

                   
       2119 TGTTTTT
          1 TGTTTTT

       2126 ATTATTATTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
   7   20  0.77
   8    6  0.23

ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86


Consensus pattern (7 bp):   
TGTTTTT

Found at i:2512 original size:13 final size:13

Alignment explanation


    Indices: 2494--2526  Score: 66
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       2484 TATATAGTAG

                         
       2494 TAAGATAGTAAGA
          1 TAAGATAGTAAGA

                         
       2507 TAAGATAGTAAGA
          1 TAAGATAGTAAGA

                   
       2520 TAAGATA
          1 TAAGATA

       2527 AGATATAATA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24


Consensus pattern (13 bp):   
TAAGATAGTAAGA
Done.