Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022778.1 Corchorus olitorius cultivar O-4 contig22811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2817
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2730 original size:22 final size:22

Alignment explanation


    Indices: 2705--2746  Score: 59
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       2695 TTTTAAGCAA

                                   
       2705 CCTTACTA-AATGTTTTAGTAAC
          1 CCTTACTACAAT-TTTTAGTAAC

                 *              
       2727 CCTTATTACAATTTTTAGTA
          1 CCTTACTACAATTTTTAGTA

       2747 GGCTCTATTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  22   15  0.83
  23    3  0.17

ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45


Consensus pattern (22 bp):   
CCTTACTACAATTTTTAGTAAC
Done.