Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022780.1 Corchorus olitorius cultivar O-4 contig22813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4253
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36


Found at i:4090 original size:13 final size:13

Alignment explanation


    Indices: 4072--4099  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       4062 GTTTCTCCAA

                         
       4072 ATCTATACTATAT
          1 ATCTATACTATAT

                         
       4085 ATCTATACTATAT
          1 ATCTATACTATAT

              
       4098 AT
          1 AT

       4100 AAAAGTACGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46


Consensus pattern (13 bp):   
ATCTATACTATAT
Done.