Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022781.1 Corchorus olitorius cultivar O-4 contig22814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53985

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
645--669
10
2.5
10
100
0
50
32
0
8
60
1.26
747--773
4
6.8
4
100
0
54
51
22
0
25
1.48
683--907
77
3.0
76
88
10
331
43
13
6
36
1.70
755--907
71
2.2
68
89
9
231
43
13
5
36
1.69
751--907
69
2.2
71
93
4
264
43
14
5
36
1.69
1017--1046
9
3.4
9
95
4
53
46
0
6
46
1.29
3723--3761
2
19.5
2
100
0
78
51
0
0
48
1.00
28952--29060
53
2.1
53
98
0
209
38
21
18
22
1.93
29211--29418
106
2.0
102
93
3
353
41
14
22
20
1.89
30591--30618
13
2.2
13
100
0
56
39
14
0
46
1.44
30996--31228
22
10.5
22
70
13
147
36
10
17
36
1.84
30993--31201
66
3.1
65
77
11
210
34
10
18
36
1.85
31233--31301
22
3.1
23
74
12
65
39
8
18
33
1.82
31319--31672
22
16.0
22
71
9
175
38
9
16
35
1.82
31478--31670
87
2.2
88
77
6
205
39
10
14
35
1.80
31500--31626
65
1.9
66
80
1
148
39
11
14
35
1.81
31762--32199
22
20.0
22
72
8
250
36
9
16
36
1.82
31917--31996
23
3.5
23
89
1
108
37
5
17
40
1.72
31764--32292
22
24.3
22
70
12
229
37
9
16
36
1.81
32247--32299
22
2.5
22
81
9
65
43
11
16
28
1.83
43736--43797
33
1.9
32
83
9
81
30
14
32
22
1.94
50160--50193
17
1.9
18
88
5
52
11
8
32
47
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53494--53554
32
1.9
32
93
0
104
47
6
19
26
1.74

Tables:   1

The End!