Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022783.1 Corchorus olitorius cultivar O-4 contig22816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45904

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--74
2
35.0
2
100
0
140
0
50
0
50
1.00
3313--3385
37
2.0
37
97
2
139
21
31
8
38
1.83
8096--8138
22
2.0
22
85
0
59
9
2
2
86
0.76
9779--9807
14
2.1
14
100
0
58
44
6
27
20
1.77
14465--14513
23
2.1
23
100
0
98
34
8
8
48
1.62
16668--16783
47
2.5
47
81
5
137
46
6
39
6
1.57
17509--17560
17
3.1
18
81
8
65
36
5
1
55
1.35
17619--17682
27
2.4
27
91
0
101
10
32
15
40
1.82
17603--17654
20
2.6
20
84
6
70
13
30
15
40
1.86
19668--19727
25
2.4
25
76
15
61
40
6
25
28
1.80
19700--19770
34
2.1
35
89
2
108
42
9
18
29
1.82
19708--19781
35
2.1
34
85
2
94
37
10
18
32
1.86
19829--19856
2
14.0
2
100
0
56
50
0
0
50
1.00
21075--21133
23
2.6
22
86
7
82
38
28
1
30
1.67
21081--21131
23
2.2
23
96
0
93
37
31
1
29
1.69
21122--21146
11
2.3
11
100
0
50
52
28
0
20
1.47
21837--21891
2
30.5
2
72
20
50
52
0
0
47
1.00
25822--25903
42
2.0
42
100
0
164
29
21
9
39
1.86
38575--38605
3
10.3
3
92
0
53
35
3
0
61
1.12
38976--39013
11
3.5
11
89
10
51
39
0
2
57
1.12
39695--40021
165
2.0
165
87
5
482
36
11
9
42
1.73
40035--40073
20
2.0
20
85
10
53
28
5
2
64
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40291--40420
68
1.9
66
81
9
156
37
10
16
35
1.83
40240--40419
22
7.9
22
70
15
105
36
9
18
36
1.83
40452--40852
22
18.0
22
69
13
169
41
10
15
32
1.81
40544--41177
44
14.9
43
64
19
156
40
9
16
34
1.80
40865--41179
22
15.0
21
66
15
96
40
8
16
34
1.79
41099--41190
22
4.1
22
80
4
87
36
6
15
41
1.73
41229--41317
45
2.0
45
84
4
117
32
11
16
39
1.84
41413--41460
22
2.2
22
84
0
60
52
10
8
29
1.65

Tables:   1

The End!