Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022784.1 Corchorus olitorius cultivar O-4 contig22817, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62641

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--119
3
40.0
3
98
1
231
32
0
0
67
0.91
4895--4929
14
2.5
14
90
0
52
77
0
20
2
0.90
6950--6988
3
13.0
3
94
0
60
38
33
28
0
1.57
34304--34347
22
2.0
22
100
0
88
27
22
13
36
1.92
38214--38255
3
14.0
3
89
0
66
38
33
0
28
1.58
42509--42557
18
2.8
18
74
20
50
40
0
2
57
1.10
47175--47212
19
2.0
20
84
5
51
10
13
5
71
1.30
47497--47525
2
14.5
2
100
0
58
51
0
0
48
1.00
48915--48952
11
3.5
11
85
10
51
57
2
0
39
1.12
49230--49347
59
2.0
59
98
0
227
38
13
3
44
1.61
50185--50215
15
2.1
15
100
0
62
48
12
12
25
1.77
49962--50241
146
1.9
146
93
0
479
45
10
13
31
1.76
51174--51208
13
2.7
13
100
0
70
71
8
5
14
1.29
54493--54526
2
17.0
2
93
0
59
47
0
0
52
1.00
59655--59683
15
1.9
15
100
0
58
17
27
13
41
1.87

Tables:   1

The End!