Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022785.1 Corchorus olitorius cultivar O-4 contig22818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151783

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1028--1228
100
2.0
100
100
0
402
28
13
18
38
1.90
21779--21805
11
2.5
11
100
0
54
92
0
7
0
0.38
27042--27077
2
18.0
2
94
0
63
50
0
2
47
1.15
34073--34110
18
2.1
18
90
0
58
42
10
10
36
1.74
39614--39648
18
1.9
18
94
0
61
51
11
8
28
1.67
43134--43163
12
2.4
13
88
11
53
66
13
6
13
1.43
46106--46174
2
39.0
2
70
28
50
46
1
1
50
1.19
47074--47212
72
1.9
72
94
0
242
33
15
26
24
1.95
52611--52768
76
2.1
76
98
0
307
38
12
16
32
1.85
60201--60238
10
3.9
10
83
16
53
31
15
0
52
1.43
60557--60653
22
4.4
22
74
10
99
30
7
20
41
1.79
60568--60683
22
5.3
22
75
7
85
33
8
17
40
1.80
60650--60836
22
8.6
22
75
7
141
35
11
17
35
1.86
60879--61606
22
33.5
22
67
13
145
36
9
16
37
1.81
61074--61587
22
23.5
22
69
14
147
37
9
15
37
1.80
61267--61432
85
1.9
85
80
10
194
38
6
19
35
1.78
61283--61475
107
1.8
106
80
10
232
37
7
19
35
1.80
61459--61560
46
2.3
44
79
3
114
37
13
12
36
1.83
61696--61753
22
2.6
23
83
8
75
43
5
12
39
1.64
69995--70069
32
2.3
32
97
0
141
18
17
26
37
1.93
72188--72216
13
2.2
13
100
0
58
44
17
6
31
1.75
74688--74773
43
2.0
44
95
2
156
56
3
1
38
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78796--78828
17
1.9
17
100
0
66
36
9
24
30
1.86
79838--79884
17
2.9
16
80
20
53
10
14
0
74
1.07
89257--89323
31
2.2
31
84
5
84
47
8
19
23
1.77
89454--89532
31
2.5
31
93
0
131
35
15
12
36
1.85
90621--90702
31
2.6
31
88
0
137
37
7
17
37
1.77
90727--90763
11
3.4
11
88
0
56
18
32
24
24
1.97
90842--90908
31
2.2
29
84
5
80
22
14
11
50
1.76
90986--91026
20
2.0
20
100
0
82
36
9
24
29
1.87
97351--97378
2
14.0
2
100
0
56
0
50
0
50
1.00
99175--99227
27
2.0
27
85
7
72
28
20
18
32
1.97
99171--99230
27
2.3
26
78
13
63
28
20
18
33
1.96
100172--100202
16
1.9
16
93
0
53
48
16
22
12
1.80
101933--101989
27
2.1
27
86
0
78
31
14
17
36
1.89
116989--117044
7
7.4
7
79
15
58
71
0
26
1
0.96
116989--117043
17
3.6
16
85
11
71
70
0
27
1
0.97
116997--117043
17
2.9
17
84
15
73
70
0
29
0
0.88
126558--126585
14
2.0
14
100
0
56
28
21
7
42
1.79
127306--127335
14
2.1
14
100
0
60
50
6
13
30
1.67
129208--129260
26
2.0
26
82
7
63
32
13
20
33
1.91
130162--130197
12
3.0
12
87
0
54
0
41
8
50
1.33

Tables:   1

The End!