Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022787.1 Corchorus olitorius cultivar O-4 contig22820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8352
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34


Found at i:414 original size:16 final size:16

Alignment explanation


    Indices: 389--419  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        379 TCTAAATATT

                            
        389 ATAAAGATTTAGTAAA
          1 ATAAAGATTTAGTAAA

                 *         
        405 ATAAATATTTAGTAA
          1 ATAAAGATTTAGTAA

        420 TATTTTTCAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35


Consensus pattern (16 bp):   
ATAAAGATTTAGTAAA

Found at i:8247 original size:23 final size:24

Alignment explanation


    Indices: 8221--8266  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       8211 AATACTTATA

                                    
       8221 TTAATT-AAATTCTTAGGTATTTT
          1 TTAATTCAAATTCTTAGGTATTTT

                                   
       8244 TTAATTCAAATTCTTAGGTATTT
          1 TTAATTCAAATTCTTAGGTATTT

       8267 GTGCAAACGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23    6  0.27
  24   16  0.73

ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54


Consensus pattern (24 bp):   
TTAATTCAAATTCTTAGGTATTTT

Done.