Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022788.1 Corchorus olitorius cultivar O-4 contig22821, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1320
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36


Found at i:216 original size:36 final size:36

Alignment explanation


    Indices: 169--238  Score: 122
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        159 GAGATTTTGG

                         *      *               
        169 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAATA

                                              
        205 AGAAATATGATAACCAAAATCACAAAAAATGTAA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAA

        239 GGTTATTGAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  36   32  1.00

ACGTcount: A:0.61, C:0.09, G:0.09, T:0.21


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCACAAAAAATGTAATA
Done.