Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002279.1 Corchorus olitorius cultivar O-4 contig02279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1030
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36


Found at i:314 original size:12 final size:12

Alignment explanation


    Indices: 297--321  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        287 GATCAGATAA

                        
        297 GTCTTACAGTAT
          1 GTCTTACAGTAT

                        
        309 GTCTTACAGTAT
          1 GTCTTACAGTAT

             
        321 G
          1 G

        322 AACGAACCCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40


Consensus pattern (12 bp):   
GTCTTACAGTAT

Found at i:358 original size:14 final size:14

Alignment explanation


    Indices: 341--371  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        331 TCAATTCAAA

                          
        341 GATTGAAATTCTTG
          1 GATTGAAATTCTTG

                          
        355 GATTGAAATTCTTG
          1 GATTGAAATTCTTG

               
        369 GAT
          1 GAT

        372 AGCCCTGATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42


Consensus pattern (14 bp):   
GATTGAAATTCTTG

Found at i:1030 original size:13 final size:12

Alignment explanation


    Indices: 1003--1027  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        993 CTTTATTTTG

                        
       1003 ATTTTTTATATA
          1 ATTTTTTATATA

                        
       1015 ATTTTTTATATA
          1 ATTTTTTATATA

             
       1027 A
          1 A

       1028 ATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64


Consensus pattern (12 bp):   
ATTTTTTATATA
Done.