Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022794.1 Corchorus olitorius cultivar O-4 contig22827, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92708

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2258--2403
67
2.2
67
82
4
172
32
8
17
41
1.79
2308--2448
67
2.1
67
80
5
151
38
5
15
40
1.71
2255--2650
22
18.0
22
72
11
179
36
9
16
36
1.82
2749--2830
22
3.7
22
77
6
85
35
6
20
37
1.78
2794--2838
22
2.0
22
91
0
72
33
6
15
44
1.73
2860--2932
22
3.3
22
86
5
85
43
6
17
31
1.75
2877--2944
22
3.0
22
91
2
100
42
7
17
32
1.77
11001--11125
39
3.3
39
70
6
121
29
14
26
29
1.95
10981--11125
75
2.0
73
87
4
211
28
15
24
31
1.96
10941--11084
33
4.2
33
69
10
90
31
15
24
28
1.95
11001--11113
36
3.1
36
72
8
102
29
15
23
30
1.96
10986--11150
75
2.2
75
82
3
201
28
16
24
30
1.96
20812--20903
44
2.1
44
93
0
157
42
16
17
23
1.88
30158--30224
29
2.3
29
89
0
98
41
17
20
19
1.90
35004--35169
85
2.0
85
86
4
237
34
7
9
48
1.63
36757--36792
2
18.0
2
100
0
72
50
0
0
50
1.00
37795--37867
31
2.4
31
85
0
92
34
9
17
38
1.83
37813--37891
31
2.5
31
91
0
131
39
10
13
36
1.79
38001--38067
31
2.2
29
86
5
89
20
22
11
44
1.84
38006--38067
29
2.1
31
87
6
92
19
22
12
45
1.84
39214--39381
31
5.5
31
67
16
118
32
17
20
29
1.96
39218--39376
60
2.7
60
95
2
275
33
16
20
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39249--39348
29
3.4
28
68
18
78
32
16
22
30
1.95
39421--39583
60
2.7
60
85
7
231
26
18
19
35
1.95
40726--40801
29
2.6
29
80
2
98
19
23
14
42
1.88
48027--48285
108
2.5
104
89
4
387
40
8
9
41
1.68
50237--50284
17
2.8
17
87
6
62
33
20
22
22
1.97
58966--59003
19
2.2
19
86
13
55
0
21
0
78
0.74
61844--61882
19
2.0
20
90
5
62
46
25
15
12
1.81
61938--62021
29
2.8
30
80
8
91
44
13
25
17
1.85
77531--77782
131
2.0
127
88
6
377
49
1
10
38
1.49
81229--81402
43
4.0
43
97
0
321
32
22
18
26
1.97
85940--85979
19
2.1
19
95
0
71
32
17
0
50
1.47

Tables:   1

The End!