Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022798.1 Corchorus olitorius cultivar O-4 contig22831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42923

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
511--642
27
4.9
27
80
8
126
28
18
28
24
1.98
782--811
15
2.0
15
100
0
60
40
33
13
13
1.83
9550--9578
14
2.1
14
100
0
58
41
0
20
37
1.53
16823--16879
28
2.0
29
96
3
107
21
8
21
49
1.76
21844--21991
74
2.0
74
95
0
269
26
20
27
25
1.99
22244--22280
19
2.0
19
94
5
67
67
0
0
32
0.91
23837--23866
10
3.0
10
100
0
60
20
20
0
60
1.37
38080--38657
192
3.0
192
93
0
969
34
16
12
35
1.88
39618--40195
191
3.0
191
94
0
1014
33
17
13
36
1.88
41156--41507
191
1.8
191
96
1
652
32
17
13
35
1.90
41860--41900
19
2.0
19
86
13
55
4
17
0
78
0.93

Tables:   1

The End!