Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022799.1 Corchorus olitorius cultivar O-4 contig22832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83289

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9793--9851
31
1.9
31
92
0
100
40
27
11
20
1.87
20322--20364
17
2.5
17
82
10
52
48
13
27
9
1.73
22486--22538
24
2.2
24
89
0
79
41
13
13
32
1.82
22932--22962
2
15.5
2
100
0
62
0
51
0
48
1.00
33138--33191
18
3.0
18
97
0
99
27
7
48
16
1.73
33373--33479
54
2.0
54
96
0
196
24
14
32
28
1.95
38620--38667
25
1.9
25
86
0
69
18
20
12
47
1.81
46999--47042
22
2.0
22
86
4
63
61
2
2
34
1.21
48084--48123
20
2.0
20
90
0
62
25
25
15
35
1.94
48930--48983
24
2.4
22
80
19
67
29
25
11
33
1.91
48940--48994
12
4.5
12
88
4
83
30
21
12
34
1.91
48940--48994
25
2.2
24
90
3
83
30
21
12
34
1.91
52436--52592
80
2.0
80
89
0
242
25
21
24
28
1.99
58153--58179
2
13.5
2
100
0
54
0
48
0
51
1.00
58153--58201
16
3.1
16
85
5
55
2
38
2
57
1.22
68283--68315
15
2.2
15
100
0
66
18
21
27
33
1.96
69749--69848
49
2.0
49
96
0
182
28
18
17
37
1.92
73240--73269
9
3.3
9
100
0
60
90
0
10
0
0.47
79047--79098
26
1.9
28
84
7
72
34
25
15
25
1.95
80513--80549
19
1.9
19
88
0
56
32
18
13
35
1.90
82360--82391
7
4.6
7
100
0
64
46
12
0
40
1.42

Tables:   1

The End!