Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022801.1 Corchorus olitorius cultivar O-4 contig22834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17467

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3092--4157
22
49.0
21
69
14
439
34
16
9
38
1.82
3099--4394
44
29.9
43
68
15
374
35
16
9
38
1.82
3385--4395
66
15.6
63
70
15
256
35
17
9
38
1.82
3387--3637
126
2.0
125
81
4
290
35
15
8
39
1.79
4036--4303
146
1.8
144
84
4
369
36
18
8
36
1.82
4175--4396
22
9.9
22
75
10
173
38
18
9
34
1.82
4180--4399
68
3.3
67
81
8
259
38
19
9
33
1.83
5192--5232
21
1.9
22
85
5
57
43
29
17
9
1.80
5967--6009
16
2.7
15
82
10
50
0
16
13
69
1.19
7074--7384
161
1.9
160
82
5
385
48
2
9
38
1.52
17419--17464
2
23.0
2
100
0
92
50
0
0
50
1.00

Tables:   1

The End!