Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022803.1 Corchorus olitorius cultivar O-4 contig22836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18655

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--61
25
2.4
25
88
8
86
53
3
1
41
1.27
728--987
22
11.8
22
71
14
135
37
16
10
35
1.84
2831--3007
22
8.1
22
70
10
114
33
17
10
38
1.83
3089--3302
22
9.7
22
80
4
153
32
14
12
41
1.82
3295--3359
20
3.2
19
72
20
51
33
15
7
43
1.75
3088--3361
22
12.6
22
72
13
115
32
14
11
41
1.82
3384--3523
22
6.4
21
76
11
97
38
17
7
36
1.79
3528--3741
22
9.6
22
72
8
141
36
20
9
33
1.84
3425--3647
122
1.8
122
84
3
304
37
18
8
35
1.82
3528--3741
66
3.2
66
74
9
173
36
20
9
33
1.84
5872--6275
22
18.0
22
70
11
187
34
15
11
37
1.85
6133--6685
277
2.0
279
92
1
932
35
13
14
36
1.85
6471--6546
22
3.5
22
85
7
100
36
11
11
39
1.79
7046--7090
21
2.1
21
83
0
54
35
11
40
13
1.80
7166--7198
17
1.9
17
88
11
50
15
6
6
72
1.24
7786--7821
3
12.3
3
88
5
56
30
0
0
69
0.89
7784--7820
17
2.2
17
95
0
65
32
0
0
67
0.91
7789--7815
14
1.9
14
100
0
54
33
0
0
66
0.92
9833--9870
11
3.5
11
85
10
51
57
2
0
39
1.12

Tables:   1

The End!