Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022805.1 Corchorus olitorius cultivar O-4 contig22838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9886
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:4489 original size:12 final size:13

Alignment explanation


    Indices: 4471--4500  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       4461 GTTTTCTTTA

                         
       4471 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                         
       4484 -TTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
       4496 ATTTT
          1 ATTTT

       4501 AATTGCTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG

Found at i:4732 original size:16 final size:17

Alignment explanation


    Indices: 4711--4742  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

       4701 GAAATTGCGT

                             
       4711 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                            
       4727 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

       4743 AATTTGCACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC
Done.