Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022806.1 Corchorus olitorius cultivar O-4 contig22839, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5906
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:3867 original size:4 final size:4

Alignment explanation


    Indices: 3858--3887  Score: 60
    Period size: 4  Copynumber: 7.5  Consensus size: 4

       3848 AAGGGAGGTT

                                                 
       3858 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
          1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT

       3888 CTGATTGAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   26  1.00

ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77


Consensus pattern (4 bp):   
TTTC

Done.