Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022807.1 Corchorus olitorius cultivar O-4 contig22840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5126
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:4465 original size:2 final size:2

Alignment explanation


    Indices: 4458--4484  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       4448 GGTTTGATGA

                                                    
       4458 AC AC AC AC AC AC AC AC AC AC AC AC AC A
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC A

       4485 AGTAGATCTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.