Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022813.1 Corchorus olitorius cultivar O-4 contig22846, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5679
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:1743 original size:12 final size:12

Alignment explanation


    Indices: 1726--1753  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       1716 GTAACTTACC

                        
       1726 GATGTGTTTGGT
          1 GATGTGTTTGGT

                        
       1738 GATGTGTTTGGT
          1 GATGTGTTTGGT

                
       1750 GATG
          1 GATG

       1754 CCGCAGTGAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.11, C:0.00, G:0.43, T:0.46


Consensus pattern (12 bp):   
GATGTGTTTGGT
Done.