Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022814.1 Corchorus olitorius cultivar O-4 contig22847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95930

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1754--1786
16
2.1
16
88
11
50
42
15
12
30
1.83
2662--2691
6
5.0
6
91
0
51
83
0
3
13
0.77
2662--2695
12
2.8
12
90
0
59
82
0
5
11
0.83
6907--6932
11
2.4
11
100
0
52
69
7
15
7
1.35
7521--7556
18
1.9
18
88
5
54
36
22
2
38
1.69
8730--8815
43
2.0
43
100
0
172
44
11
6
37
1.68
9194--9236
21
2.0
22
86
4
61
46
20
9
23
1.79
9311--9357
16
3.1
15
82
11
53
59
17
10
12
1.60
11817--11883
29
2.4
28
87
7
93
49
17
4
28
1.66
12964--12989
11
2.4
11
100
0
52
69
7
15
7
1.35
13577--13612
18
1.9
18
88
5
54
36
22
2
38
1.69
27976--28011
18
2.1
18
89
5
56
38
8
8
44
1.65
31054--31134
31
2.6
31
82
5
92
46
16
6
30
1.71
34932--34965
15
2.2
16
89
5
52
73
14
2
8
1.19
44331--44379
21
2.3
21
85
0
62
46
22
6
24
1.74
45453--45489
6
6.5
6
90
9
60
86
0
0
13
0.57
45453--45489
11
3.2
12
92
7
60
86
0
0
13
0.57
49764--49805
15
2.7
15
96
3
75
11
7
14
66
1.43
73792--73819
11
2.5
11
100
0
56
89
10
0
0
0.49
73777--73829
17
3.1
17
72
8
54
75
13
3
7
1.15
74947--74984
15
2.4
16
86
8
51
68
5
26
0
1.11
76347--77074
63
11.1
65
85
7
886
40
14
14
29
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76356--77074
200
3.7
194
85
7
963
40
14
14
29
1.87
78478--78526
23
2.1
23
92
0
80
20
20
14
44
1.86
82301--82338
11
3.5
11
89
10
51
39
0
2
57
1.12
85918--85991
29
2.4
30
82
10
89
21
31
16
31
1.95
86056--86094
19
2.1
18
85
4
51
25
15
25
33
1.95
86260--86338
32
2.6
30
76
11
74
37
16
26
18
1.92
89459--89499
17
2.3
18
91
4
66
36
4
2
56
1.34
94905--94943
15
2.5
15
91
4
60
15
7
10
66
1.43
95870--95928
26
2.3
26
88
5
84
61
5
3
30
1.34

Tables:   1

The End!