Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022815.1 Corchorus olitorius cultivar O-4 contig22848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85240

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2605--2646
15
2.7
15
92
3
66
64
14
9
11
1.50
4612--4662
20
2.5
20
81
6
59
17
3
29
49
1.65
12117--12520
145
2.7
145
86
3
522
29
20
16
34
1.94
12382--12646
128
2.1
128
97
0
503
27
22
15
33
1.95
12237--12799
281
2.0
273
91
2
901
28
21
15
34
1.94
12510--12875
153
2.4
153
92
0
597
29
21
14
34
1.93
12871--12895
1
25.0
1
100
0
50
100
0
0
0
0.00
12946--12983
20
1.9
20
89
10
60
21
39
26
13
1.89
13023--13521
37
13.7
37
69
12
300
27
21
10
40
1.85
13039--13289
138
1.8
138
93
1
441
26
21
10
41
1.85
13185--13513
112
2.9
112
95
0
586
27
22
9
40
1.85
13880--13920
20
2.0
20
100
0
82
19
24
9
46
1.80
14475--15521
519
2.0
521
97
2
1976
34
23
13
29
1.92
17287--17316
2
15.0
2
100
0
60
50
0
0
50
1.00
17576--17626
20
2.5
20
81
6
59
17
3
29
49
1.65
20092--20131
21
1.9
21
84
0
53
17
20
35
27
1.95
24341--24397
21
2.7
21
83
8
62
47
22
3
26
1.67
24353--24397
21
2.2
20
88
4
63
46
22
4
26
1.70
31045--31078
2
17.0
2
100
0
68
50
0
0
50
1.00
36571--36611
3
13.7
3
100
0
82
68
0
0
31
0.90
36620--36713
44
2.1
44
88
3
136
43
28
3
24
1.69
38329--38463
63
2.1
63
97
0
252
50
19
10
20
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40678--40725
17
2.6
20
75
21
59
56
16
8
18
1.65
42778--42833
17
3.3
16
82
5
58
26
16
23
33
1.95
43400--43431
16
2.0
16
100
0
64
12
18
12
56
1.67
44861--44893
16
2.1
16
100
0
66
33
30
6
30
1.82
47156--47228
35
2.1
36
92
2
121
27
13
16
42
1.86
47253--47388
37
3.7
35
79
15
134
27
18
16
38
1.92
49809--49865
5
12.2
5
88
7
52
0
15
0
84
0.63
49813--49847
1
35.0
1
88
0
52
0
5
0
94
0.32
52873--53342
121
3.9
121
85
3
626
40
12
8
38
1.74
56967--57396
96
4.5
96
86
1
567
26
26
22
23
2.00
57029--57389
49
7.5
47
71
5
283
26
27
22
23
2.00
57403--57499
26
3.7
26
84
1
104
22
22
42
12
1.87
66663--66701
19
2.1
19
90
0
60
35
5
28
30
1.79
71689--71713
2
12.5
2
100
0
50
48
0
0
52
1.00
76170--76466
39
7.7
39
82
4
305
25
16
16
41
1.89
76174--76625
77
5.9
77
71
10
322
24
17
17
40
1.90
82671--83023
13
24.2
13
67
22
127
50
0
9
39
1.39
82734--82966
30
7.9
30
67
19
125
48
0
9
41
1.40
82682--82859
87
2.1
86
93
5
306
48
0
11
39
1.43
82827--82881
17
3.5
17
73
19
64
47
0
9
43
1.35
82844--83032
45
4.2
45
78
3
186
51
0
6
40
1.32
82844--83031
89
2.1
89
90
2
290
52
0
6
40
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84035--84071
16
2.2
17
90
4
58
56
2
29
10
1.47

Tables:   1

The End!