Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022818.1 Corchorus olitorius cultivar O-4 contig22851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6160
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31


Found at i:2678 original size:30 final size:29

Alignment explanation


    Indices: 2639--2695  Score: 89
    Period size: 30  Copynumber: 1.9  Consensus size: 29

       2629 GTTTATTAAT

                                           
       2639 GAAACTTGAAAATTAAAGACATAAGATAAAA
          1 GAAACTTGAAAATTAAAG-CATAA-ATAAAA

                                       
       2670 GAAA-TTGAAAATTAAAGCATAAATAA
          1 GAAACTTGAAAATTAAAGCATAAATAA

       2696 CTAATCCTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  28    4  0.15
  29    5  0.19
  30   13  0.50
  31    4  0.15

ACGTcount: A:0.61, C:0.05, G:0.12, T:0.21


Consensus pattern (29 bp):   
GAAACTTGAAAATTAAAGCATAAATAAAA

Found at i:4763 original size:13 final size:13

Alignment explanation


    Indices: 4745--4777  Score: 50
    Period size: 12  Copynumber: 2.6  Consensus size: 13

       4735 ATTAGTGTAT

                         
       4745 AAATTAAAAAATA
          1 AAATTAAAAAATA

                      *  
       4758 AAATT-AAAATTA
          1 AAATTAAAAAATA

                    
       4770 AAATTAAA
          1 AAATTAAA

       4778 TGTGCAAAGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  12   11  0.61
  13    7  0.39

ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27


Consensus pattern (13 bp):   
AAATTAAAAAATA
Done.