Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022819.1 Corchorus olitorius cultivar O-4 contig22852, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2660
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31


Found at i:931 original size:19 final size:18

Alignment explanation


    Indices: 898--933  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        888 TTGAAATTAT

                              
        898 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
        916 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

        934 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA

Found at i:2201 original size:11 final size:11

Alignment explanation


    Indices: 2185--2209  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       2175 GGGGAATAAT

                       
       2185 CAATCCAAAAA
          1 CAATCCAAAAA

                       
       2196 CAATCCAAAAA
          1 CAATCCAAAAA

               
       2207 CAA
          1 CAA

       2210 ACAATTTTCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.28, G:0.00, T:0.08


Consensus pattern (11 bp):   
CAATCCAAAAA
Done.