Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022822.1 Corchorus olitorius cultivar O-4 contig22855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8955
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:8943 original size:16 final size:16

Alignment explanation


    Indices: 8922--8952  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       8912 GCGAATGCAT

                            
       8922 TCATGCAAAGCATCAG
          1 TCATGCAAAGCATCAG

                     *     
       8938 TCATGCAAATCATCA
          1 TCATGCAAAGCATCA

       8953 TAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23


Consensus pattern (16 bp):   
TCATGCAAAGCATCAG
Done.