Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022826.1 Corchorus olitorius cultivar O-4 contig22859, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3383
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33


Found at i:1694 original size:26 final size:26

Alignment explanation


    Indices: 1660--1709  Score: 75
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       1650 ATTTATTAAT

                           *           
       1660 GAAACTTGAAAATTAGAGACATAAAAG
          1 GAAACTTGAAAATTAAAG-CATAAAAG

                                    
       1687 GAAA-TTGAAAATTAAAGCATAAA
          1 GAAACTTGAAAATTAAAGCATAAA

       1710 TAACTAATCC


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  25    6  0.27
  26   12  0.55
  27    4  0.18

ACGTcount: A:0.58, C:0.06, G:0.16, T:0.20


Consensus pattern (26 bp):   
GAAACTTGAAAATTAAAGCATAAAAG
Done.