Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022827.1 Corchorus olitorius cultivar O-4 contig22860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2160
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:43 original size:22 final size:22

Alignment explanation


    Indices: 15--58  Score: 70
    Period size: 22  Copynumber: 2.0  Consensus size: 22

          5 GACTAAGGAT

                     **           
         15 TAGTCGACTTGAGAGGAAGCAA
          1 TAGTCGACTCAAGAGGAAGCAA

                                  
         37 TAGTCGACTCAAGAGGAAGCAA
          1 TAGTCGACTCAAGAGGAAGCAA

         59 ACCGTCGACA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.39, C:0.16, G:0.30, T:0.16


Consensus pattern (22 bp):   
TAGTCGACTCAAGAGGAAGCAA
Done.